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fix: tracker-sweep 2026-07-26 (v3.32.10) — 9 bugs + promo seed + follow-ups (#2788)

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* fix: tracker sweep 2026-07-26 — 9 bug fixes + promo seed

Closes: #2770 #2774 #2776 #2777 #2781 #2782 #2785 #2786 (Codex follow-up)
Refs:   #2775 (memory upsert semantics)

- Statusline promo row blank on new installs — restored cold-start local
  seed pool that ADR-311 had emptied. Remote Cognitum-served pool
  (funnel.ruv.io/v1/messages) remains authoritative via
  eligibleMessagesFromPools (remote wins by id); seed only fills the
  ≤ 60s cold-start window before first successful remote fetch.
- #2777 — ruflo init no longer imports the entire ruvnet/ruflo repo
  (97 MB, 384 SKILL.md) into .agents/skills/ruflo/. Materializes single
  platform SKILL.md; detects "bloated" prior install and re-materializes.
- #2781 — ruflo-adr adr-index no longer silently drops ADR data: status
  regex accepts "- **Status**: proposed"; single-line and wrapped
  relation lines parse fully; CLI_CORE=1 warns and unifies namespace.
- #2770 — Windows: browser-session MCP tools + two init execFileSync npx
  sites now set shell: process.platform === 'win32' so cmd.exe resolves
  npx.cmd. POSIX behavior unchanged.
- #2782 — WorkerDaemon.saveState + autopilot-state.saveState + appendLog
  no longer race on shared .tmp filename; all three call writeFileAtomic
  (pid + timestamp + random-suffixed temp).
- #2785 — ruflo hooks post-task accepts --task/-t and --store-results
  flags matching CLAUDE.md-documented usage; routing outcomes finally
  persist to the namespace hooks_metrics reads.
- #2786 — AgentDB no longer silently fails to initialize under
  CLAUDE_FLOW_ENCRYPT_AT_REST=1. New getAgentDbPath() returns
  agentdb-memory.db in the same directory as memory.db, so the
  ControllerRegistry native better-sqlite3 opens a distinct file from
  the sql.js CRUD writer's encrypted memory.db.
- #2776 — Statusline security STALE/IN_PROGRESS branches reachable via
  local overlay recomputing freshness on every render from
  .claude/security-scans/scan-*.json. Env: RUFLO_SCAN_STALE_HOURS (24),
  RUFLO_SCAN_PENDING_CAP_MIN (30). STALE renders dim gray.
- #2774 — Codex MCP generator registers dedicated stdio server binary
  claude-flow-mcp instead of the management CLI ruflo mcp start that
  never answers initialize. All 7 wrong-command sites fixed
  (initializer.ts + 6 template sites in generators/config-toml.ts + 2
  in migrations/index.ts + generators.test.ts:653 assertion).
- #2775 — Memory store to existing key no longer dead-ends:
  bridgeStoreEntry uses INSERT ... ON CONFLICT with tombstone
  auto-resurrect; UNIQUE returns typed error instead of null (no more
  misleading demotion into #2735 guard); bridgeDeleteEntry runs
  wal_checkpoint(PASSIVE); CLI memory store --upsert default
  materialized locally (parser.applyDefaults bug).
- Stale ruflo-rebrand assertion in codex/tests/generators.test.ts:192
  updated Co-Authored-By: claude-flow → ruflo-bot.

- #2786 fix-2/3 (hooks_metrics reads dead .claude-flow/memory/store.json;
  bridgeRecordFeedback calls non-existent agentdb API) — architectural
  rewire, needs separate PR.
- #2775 defect #3 root cause (parser.ts applyDefaults doesn't apply
  subcommand-declared defaults) — flagged by agent, other subcommands
  affected too.
- #2775 memory-tools.ts MCP tool schema still defaults upsert:false
  (parity fix flagged).

Co-Authored-By: RuFlo <ruv@ruv.net>

* fix(parser): applyDefaults now walks subcommand + command options (#2775 follow-up)

Previously only `this.globalOptions` were walked. Any subcommand-declared
`default: <value>` silently dropped and the action handler received
`undefined`. The immediate victim was `memory store --upsert` (per #2775),
but the bug is generic — every subcommand that relies on a per-flag
default was affected.

Fix: applyDefaults now accepts optional command + subcommand, walks all
three layers narrow-to-broad (subcommand > command > global), and the
first layer to supply a value wins (because it only writes when the flag
is `undefined`, so earlier writers stick).

Parser tests: 52/52 pass. Build: tsc exit 0.

Refs: #2775 (root cause behind the CLI --upsert workaround already in
`commands/memory.ts`; the workaround is now redundant but harmless).

Co-Authored-By: RuFlo <ruv@ruv.net>

* fix(mcp): memory_store defaults upsert=true for CLI parity (#2775 follow-up)

The CLI `memory store` command defaults `--upsert=true` (issue #2594, fix
c36cb4d66) so `store → delete → store` on the same (namespace, key)
doesn't trip the `UNIQUE(namespace, key)` constraint against a
soft-deleted row. The `memory_store` MCP tool schema still defaulted
`upsert: false`, so every agent-facing store-to-existing-key hit the
strict-insert path unless the caller explicitly passed `upsert: true` —
different behavior than the CLI documented.

Fix: schema description now states default true, handler reads
`input.upsert !== false` (only explicit `upsert: false` opts out).
Symmetric with the CLI-side workaround in `commands/memory.ts`.

Refs: #2775 (MCP parity follow-up flagged by the sweep agent).

Co-Authored-By: RuFlo <ruv@ruv.net>

* docs(changelog): re-scope tracker sweep to 3.32.10 + reflect final commit set

- Rename header 3.28.1 → 3.32.10 (patch on the actual current 3.32.9;
  the original 3.28.1 heading was left over from the stale-base draft
  before the rebase onto origin/main).
- Remove the #2774 bullet from the "Fixed" list — that fix was reverted
  during rebase (upstream d20f1323b superseded it and the reporter's
  diagnosis appears incorrect). Move #2774 to a new "Investigated"
  subsection with the analysis and a note recommending closure.
- Fold the #2775 parser follow-up (parser.ts:applyDefaults walks
  subcommand + command options) and the MCP parity follow-up
  (memory_store default upsert=true) into the #2775 bullet, since
  they're the same defect surfacing at three layers.
- Drop the "stale rebrand test assertion" bullet — that assertion is
  now on origin/main already; no notable delta in this PR.

Co-Authored-By: RuFlo <ruv@ruv.net>

* fix(hooks): dual-write routing decisions to JSON store for metrics reader (#2786 fix-2)

Previously `hooks_post-task --store-results` wrote routing outcomes to
AgentDB namespace `patterns` via `storeFn`, but the sync reader
`getIntelligenceStatsFromMemory()` only reads
`.claude-flow/memory/store.json`. Result: the "Pattern Learning" and
"Agent Routing" numbers in `hooks_metrics` stayed at zero even when
routing decisions were being recorded.

Fix: after the AgentDB write, mirror the same entry into the JSON store
with `metadata.type = 'routing-decision'` so the reader's filter
picks it up. AgentDB stays authoritative for cross-session retrieval;
the JSON store is the counter surface the sync reader depends on. Both
writes are wrapped in try/catch so a failure at either layer doesn't
break `hooks_post-task`.

Same shape as the existing dual-write pattern for `hooks_post-command`
at line 910-931. Keeps `getIntelligenceStatsFromMemory` synchronous
(would require async ripple through 3 callers otherwise).

Refs: #2786 fix-2 (flagged as architectural by the sweep agent — turns
out to be one bounded additive write, not a rewire).

Co-Authored-By: RuFlo <ruv@ruv.net>

* test(parser): regression coverage for command + subcommand defaults (#2775)

Three new tests in the existing `defaults` describe block:
- command-level `option.default` applies to a flagless invocation
- subcommand-level `option.default` applies to a subcommand invocation
  (this is the exact shape that trapped `memory store --upsert`)
- explicit `--no-upsert` still overrides the default:true

Guards against a re-regression of parser.ts:applyDefaults collapsing
back to only walking `globalOptions`.

52/52 → 55/55 parser tests pass.

Co-Authored-By: RuFlo <ruv@ruv.net>

* test(hooks): regression guard for #2786 fix-2 JSON dual-write

New test file `hooks-post-task-routing-dual-write-2786.test.ts` runs
`hooksPostTask.handler` in a temp cwd and asserts that when called with
`storeDecisions=true`:

  - `.claude-flow/memory/store.json` is created
  - It contains a `routing-decision:<taskId>` entry
  - The entry's shape matches what `getIntelligenceStatsFromMemory()`
    filters on (`key.includes('routing') || metadata.type === 'routing-decision'`)
  - `metadata.confidence` maps from `quality` (used to compute avgConfidence)
  - `namespace` is `patterns` (parity with the AgentDB write)

Second test guards backwards compat: when `storeDecisions` is omitted,
no routing-decision entry appears in the JSON store.

Bridge is mocked (the AgentDB path's real behavior is covered elsewhere).

2/2 pass.

Co-Authored-By: RuFlo <ruv@ruv.net>

* test(funnel): regression coverage for cold-start seed pool

New test file `funnel-messages-seed-pool.test.ts` asserts the seven
invariants of the 2026-07-26 cold-start pool restoration:
  - MESSAGES is non-empty
  - contains ≥1 disclosure so the disclosure gate can unlock cold
  - every disclosure carries the exact ' · manage: ruflo settings' tail
    (ADR-301 invariant)
  - every seed message passes isValidMessage() (schema / host allowlist
    / control-char strip / 80-col cap)
  - every URL is on the exact-host allowlist (no third-party leaks)
  - contains ≥1 educational (4-in-5 rotation slots)
  - all ids are unique (rotation dedups on id)

7/7 pass. Guards against a re-empty of MESSAGES that would blank the
statusline promo row again on new installs.

Co-Authored-By: RuFlo <ruv@ruv.net>

* fix(funnel): disclosure gate now consults local seed pool (E2E follow-up)

E2E validation of the 2026-07-26 sweep exposed a gap: on true cold
start (no remote cache, no network), the promo row stayed blank
because `selectDisclosureMessage` only read `getRemoteMessages()` —
my local seed disclosure in messages.ts never reached the disclosure
gate, so the gate stayed `never_seen` forever.

Fix: `getDisclosureMessagePool` now merges local `MESSAGES` with the
remote pool via the same `eligibleMessagesFromPools` helper rotation
uses (remote wins by id). This mirrors the design of the rotation
selector — the seed is a cold-start bootstrap, remote takes over as
soon as its cache populates.

Verified end-to-end: cleared funnel cache + pointed
`RUFLO_FUNNEL_MESSAGES_ENDPOINT` at an unreachable host; statusline
render emits the local disclosure ("Ruflo shows occasional tips and
sponsor notes here · manage: ruflo settings") — exactly the string
seeded in messages.ts (`local.disclosure.v1`).

Refs: 2026-07-26 tracker sweep, promo row cold-start.

Co-Authored-By: RuFlo <ruv@ruv.net>
This commit is contained in:
rUv
2026-07-26 15:05:33 -07:00
committed by GitHub
parent 26c35b59b4
commit 810b13dcd6
24 changed files with 2188 additions and 1342 deletions
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.claude/helpers/statusline.cjs
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CHANGELOG.md
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@@ -13,6 +13,26 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- `RUFLO_STATUSLINE_COST_SYMBOL` — override the leading `$` (e.g. `⚡`, `€`, `🌱`); empty string shows the number alone.
- `RUFLO_STATUSLINE_HIDE_COST` — `1`/`true`/`yes`/`on` hides the segment. `cost.total_cost_usd` is a client-side estimate that may differ from the actual bill and is misleading on subscription plans.
## [3.32.10] - 2026-07-26
Bug-fix release closing the tracker-fire sweep from 2026-07-24 → 2026-07-26. All fixes are surgical and additive; no API surface change, no schema change, patch semver.
### Fixed
- **Statusline promo row blank on new installs** — restored the cold-start local seed pool that ADR-311 had emptied. The remote Cognitum-served pool (`funnel.ruv.io/v1/messages`) remains authoritative via `eligibleMessagesFromPools` (remote wins by `id`); the seed only renders during the ≤ 60s cold-start window before the first successful remote fetch lands. Nine seed messages ship: one disclosure, seven educational tips (all pointing at `cognitum.one` docs), one promotional. (`v3/@claude-flow/cli/src/funnel/messages.ts`)
- **#2777** — `ruflo init` no longer imports the entire ruvnet/ruflo repo (97 MB, 384 `SKILL.md`) into `.agents/skills/ruflo/`. Materialization now writes only the single platform `SKILL.md`, and the idempotency gate detects a "bloated" prior install (Cargo.toml/crates/ present or size > 1 MB) and wipes+re-materializes. (`v3/@claude-flow/cli/src/commands/init.ts`)
- **#2781** — `ruflo-adr adr-index` no longer silently drops ADR data: status regex accepts the `- **Status**: proposed` form `adr-create` emits, single-line and wrapped relation lines parse fully, and `CLI_CORE=1` no longer forks writes into an alternate store the default reader can't see (warns and unifies on `@claude-flow/cli@latest`). Dry-run over the repo's 531 ADRs now captures 608 edges cleanly. (`plugins/ruflo-adr/scripts/lib/parse-adrs.mjs`, `import.mjs`, `reindex.mjs`)
- **#2770** — Windows: `browser-session` MCP tools and two init-flow `execFileSync('npx', …)` sites now set `shell: process.platform === 'win32'` so cmd.exe can resolve `npx.cmd`. POSIX behavior unchanged. Each site carries a shell-injection note for future editors. (`v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts`, `v3/@claude-flow/cli/src/commands/init.ts`)
- **#2782** — `WorkerDaemon.saveState()`, `autopilot-state.saveState()`, and `autopilot-state.appendLog()` no longer race on a shared `.tmp` filename under in-process concurrent workers. All three sites now call the existing `writeFileAtomic` helper (pid + timestamp + random-suffixed temp) so concurrent callers cannot collide; each write is wrapped in try/catch so a losing racer can't crash the daemon. (`v3/@claude-flow/cli/src/services/worker-daemon.ts`, `v3/@claude-flow/cli/src/autopilot-state.ts`)
- **#2785** — `ruflo hooks post-task` now accepts `--task` (short `-t`) and `--store-results` flags, matching the CLAUDE.md-documented usage. Routing outcomes finally persist to the namespace `hooks_metrics` reads, so the "Pattern Learning" / "Agent Routing" numbers become non-zero. (`v3/@claude-flow/cli/src/commands/hooks.ts`)
- **#2786** — AgentDB no longer silently fails to initialize when `CLAUDE_FLOW_ENCRYPT_AT_REST=1` is set. Added `getAgentDbPath()` which returns the same directory as `getDbPath()` but with basename `agentdb-memory.db`, so the ControllerRegistry (native better-sqlite3) opens a distinct file from the sql.js CRUD writer's `memory.db` (which stays encrypted). `learningSystem`/`reasoningBank` populate correctly with encryption enabled. (`v3/@claude-flow/cli/src/memory/memory-bridge.ts`)
- **#2776** — Statusline security segment: `STALE` and `IN_PROGRESS` states are now reachable via a local overlay (`getLocalSecurity`) that recomputes freshness on every render from `.claude/security-scans/scan-*.json`. Configurable via `RUFLO_SCAN_STALE_HOURS` (default 24) and `RUFLO_SCAN_PENDING_CAP_MIN` (default 30); STALE renders dim gray so it stops shouting for attention once escalated. (`.claude/helpers/statusline.cjs`)
- **#2775** — Memory store to an existing key no longer dead-ends: `bridgeStoreEntry` uses `INSERT ... ON CONFLICT` with tombstone auto-resurrect; UNIQUE returns a typed error instead of `null` (no more misleading demotion into the #2735 guard); `bridgeDeleteEntry` runs `wal_checkpoint(PASSIVE)`; CLI `memory store --upsert` default now applies at the parser layer (root cause: `parser.ts:applyDefaults` only walked `globalOptions`); the `memory_store` MCP tool schema defaults `upsert: true` for CLI parity. (`v3/@claude-flow/cli/src/memory/memory-bridge.ts`, `commands/memory.ts`, `parser.ts`, `mcp-tools/memory-tools.ts`)
### Investigated
- **#2774** — Reporter's diagnosis "Codex MCP generator registers management CLI instead of stdio server" appears incorrect: `ruflo mcp start` IS a working stdio server per `v3/@claude-flow/cli/src/commands/mcp.ts` (`MCP Server started on stdio`), and upstream `d20f1323b fix(codex): ship stable Windows-safe Ruflo integration` cleanly centralized the Codex MCP config in `mcp-config.ts` using the same command shape. A proposed swap to `claude-flow-mcp` was reverted during rebase. Recommend closing the issue unless the reporter can produce a fresh repro against 3.32.9+.
## [3.5.0] - 2026-02-27
### Ruflo v3.5 — First Major Stable Release
plugins/ruflo-adr/scripts/import.mjs
+16 -9
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@@ -24,15 +24,22 @@ import { basename } from 'node:path';
import { spawnSync } from 'node:child_process';
import { findAdrs, parseAdr } from './lib/parse-adrs.mjs';
// ADR-100 / #1748 Issue 3 — CLI_CORE=1 routes to lite cli-core (~2s cold-cache).
// Note: cli-core's JsonMemoryBackend overwrites by default, so the
// "exists" / UNIQUE-constraint detection below collapses to "ok" under CLI_CORE.
// Re-running import in CLI_CORE mode is therefore idempotent (records refreshed)
// rather than incremental (records skipped). For incremental imports across
// many runs, leave CLI_CORE unset.
const CLI_PKG = process.env.CLI_CORE === '1'
? '@claude-flow/cli-core@alpha'
: '@claude-flow/cli@latest';
// #2781 (Jordi-Izquierdo-DDS): CLI_CORE=1 previously routed writes through
// `@claude-flow/cli-core@alpha`, whose JsonMemoryBackend lives in a different
// store than `@claude-flow/cli@latest`'s SQLite backend. The default
// `ruflo memory search` reader hits the SQLite store, so setting CLI_CORE=1
// for the ~2s cold-cache speedup silently made `import` succeed against a
// store the default reader never looks at ("147/147 stored" but zero hits
// in later searches). Unified on the default CLI so writer and reader
// always agree — the CLI_CORE env var is now honored as read-only/logged
// but no longer routes to a different package.
const CLI_PKG = '@claude-flow/cli@latest';
if (process.env.CLI_CORE === '1') {
console.warn(
'[ruflo-adr] warning: CLI_CORE=1 is ignored — writing to the default ' +
"`@claude-flow/cli@latest` store so `ruflo memory search` can find the records (#2781).",
);
}
const ROOT = process.env.ADR_ROOT || process.cwd();
plugins/ruflo-adr/scripts/lib/parse-adrs.mjs
+21 -3
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@@ -90,10 +90,15 @@ function parseStatus(text) {
// `**Status**:` (colon outside) and dropped every Nygard-style ADR
// to status=Unknown. Now the colon can sit on either side of the `**`.
// Strip parenthetical qualifiers like "Proposed (v3.6.x)" -> "Proposed".
let m = /^\*\*Status:?\*\*:?\s*([A-Za-z][A-Za-z\- ]*?)(?:\s*\(.*?\))?\s*$/m.exec(text);
//
// #2781 (Jordi-Izquierdo-DDS): tolerate an optional Markdown list-item
// prefix (`- **Status**: proposed`) — that's exactly what adr-create's
// own template emits, and the column-0-anchored regex dropped every
// freshly-scaffolded ADR to status=Unknown, making adr-review a no-op.
let m = /^[-*+]?\s*\*\*Status:?\*\*:?\s*([A-Za-z][A-Za-z\- ]*?)(?:\s*\(.*?\))?\s*$/m.exec(text);
if (m) return m[1].trim();
// Also handle full-bold MADR style: **Status: Value** (entire phrase bolded)
m = /^\*\*Status:\s*([A-Za-z][A-Za-z\- ]*?)(?:\s*\([^)]*\))?\*\*\s*$/m.exec(text);
m = /^[-*+]?\s*\*\*Status:\s*([A-Za-z][A-Za-z\- ]*?)(?:\s*\([^)]*\))?\*\*\s*$/m.exec(text);
return m ? m[1].trim() : 'Unknown';
}
@@ -152,7 +157,20 @@ function parseLinks(text, selfId) {
// placements (`**Supersedes:**` and `**Supersedes**:`) and an optional
// parenthetical qualifier like `**Supersedes (partial):**` — same
// tolerance as parseStatus.
const REL = (label) => new RegExp(`^\\*\\*${label}(?:\\s*\\([^)]*\\))?:?\\*\\*:?\\s*(.+)$`, 'mi');
//
// #2781 (Jordi-Izquierdo-DDS): a wrapped relation like
// **Related**: ADR-124,
// ADR-125
// silently dropped ADR-125 because `(.+)$` under /m only captures one
// physical line. Now capture the first line plus any continuation lines
// that don't look like the start of a new field (bold **Label**:), a
// heading (`##`), a horizontal rule (`---`), or a new list bullet.
// Safe because extractAdrRefs strips anything that isn't an ADR-NNN
// token, so over-capture into a plain-text continuation is harmless.
const REL = (label) => new RegExp(
`^\\*\\*${label}(?:\\s*\\([^)]*\\))?:?\\*\\*:?\\s*(.+(?:\\n(?!\\s*(?:\\*\\*[A-Za-z]|##|---|[-*+]\\s|\\d+\\.\\s))[^\\n]+)*)`,
'mi',
);
const supersedes = REL('Supersedes').exec(text);
if (supersedes) for (const ref of extractAdrRefs(supersedes[1])) out.push({ from: ref, to: selfId, relation: 'supersedes' });
const amended = REL('(?:Amended[ -]by|Amends)').exec(text);
plugins/ruflo-adr/scripts/reindex.mjs
+10 -3
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@@ -45,9 +45,16 @@ import { basename } from 'node:path';
import { spawnSync } from 'node:child_process';
import { findAdrs, parseAdr } from './lib/parse-adrs.mjs';
const CLI_PKG = process.env.CLI_CORE === '1'
? '@claude-flow/cli-core@alpha'
: '@claude-flow/cli@latest';
// #2781: unify on the default CLI so the reindex writer and the default
// `ruflo memory search` reader hit the same store. See import.mjs for the
// full rationale.
const CLI_PKG = '@claude-flow/cli@latest';
if (process.env.CLI_CORE === '1') {
console.warn(
'[ruflo-adr] warning: CLI_CORE=1 is ignored — writing to the default ' +
"`@claude-flow/cli@latest` store so `ruflo memory search` can find the records (#2781).",
);
}
const ROOT = process.env.ADR_ROOT || process.cwd();
const dryRun = process.env.REINDEX_DRY_RUN === '1';
v3/@claude-flow/cli/__tests__/funnel-messages-seed-pool.test.ts
+67
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@@ -0,0 +1,67 @@
/**
* Regression guard for the cold-start promo seed pool restored on
* 2026-07-26 (statusline promo row was blank on new installs because
* ADR-311 had emptied the local pool and the remote fetch hadn't
* landed yet).
*
* The seed pool must:
* - Contain at least one 'disclosure' message so the disclosure gate
* can unlock without waiting for a remote fetch.
* - Every disclosure MUST contain the exact " · manage: ruflo settings"
* tail — this is an ADR-301 invariant enforced by `isValidMessage`
* and a UX contract with users who look for the manage instruction.
* - Every seed message must pass `isValidMessage` (schema, host
* allowlist, control-char strip, 80-column cap) so a bad seed can't
* silently drop and re-empty the pool.
* - Every URL must be on the exact-host allowlist (cognitum.one /
* github.com/ruvnet/) so no accidental third-party host slips in.
*/
import { describe, it, expect } from 'vitest';
import { MESSAGES, isValidMessage, isAllowedUrl } from '../src/funnel/messages.js';
describe('funnel seed pool — cold-start recovery for statusline promo (2026-07-26)', () => {
it('is non-empty (guards against a re-empty of MESSAGES that would blank the row again)', () => {
expect(MESSAGES.length).toBeGreaterThan(0);
});
it('includes at least one disclosure so the disclosure gate can unlock on cold start', () => {
const disclosures = MESSAGES.filter((m) => m.class === 'disclosure');
expect(disclosures.length).toBeGreaterThan(0);
});
it('every disclosure carries the exact " · manage: ruflo settings" tail (ADR-301)', () => {
const disclosures = MESSAGES.filter((m) => m.class === 'disclosure');
for (const msg of disclosures) {
expect(msg.text).toContain(' · manage: ruflo settings');
}
});
it('every seed message passes isValidMessage() so none silently drop', () => {
for (const msg of MESSAGES) {
expect(isValidMessage(msg)).toBe(true);
}
});
it('every seed URL is on the exact-host allowlist (no third-party leaks)', () => {
for (const msg of MESSAGES) {
if (msg.url) {
expect(isAllowedUrl(msg.url)).toBe(true);
}
}
});
it('provides at least one educational tip so the rotation has something to show most slots', () => {
// 4-in-5 rotation slots are educational per ADR-301; without at least one
// educational message the promo row would be blank most of the time even
// after the disclosure gate unlocks.
const educational = MESSAGES.filter((m) => m.class === 'educational');
expect(educational.length).toBeGreaterThan(0);
});
it('all message ids are unique (rotation dedup keys on id)', () => {
const ids = MESSAGES.map((m) => m.id);
const unique = new Set(ids);
expect(unique.size).toBe(ids.length);
});
});
v3/@claude-flow/cli/__tests__/hooks-post-task-routing-dual-write-2786.test.ts
+106
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@@ -0,0 +1,106 @@
/**
* Regression guard for #2786 fix-2 — `hooks_post-task --store-results`
* dual-writes routing decisions into `.claude-flow/memory/store.json` so
* the sync reader `getIntelligenceStatsFromMemory()` (which powers the
* "Pattern Learning" / "Agent Routing" numbers in `hooks_metrics`)
* actually sees the writes.
*
* Before this fix, the CLI wrote routing outcomes only to AgentDB
* (namespace `patterns`, keys `routing-decision:*`), but the reader
* only reads `.claude-flow/memory/store.json`. Result: counters stuck
* at zero for the life of the install.
*
* The test runs `hooksPostTask.handler` in a temp cwd, then reads the
* resulting store.json off disk and asserts the shape the reader
* filters for (`key.includes('routing') || metadata.type === 'routing-decision'`).
*/
import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
import { mkdtempSync, readFileSync, rmSync, existsSync } from 'node:fs';
import { join } from 'node:path';
import { tmpdir } from 'node:os';
// Bridge is mocked so the AgentDB path is a no-op — we only care about
// the JSON dual-write here. The bridge's real behavior is covered elsewhere.
const bridgeRecordFeedback = vi.fn(async () => ({ success: true, controller: 'mock', updated: 1 }));
const bridgeRecordCausalEdge = vi.fn(async () => ({ success: true, controller: 'mock' }));
const bridgeStoreEntry = vi.fn(async () => ({ success: true, controller: 'mock' }));
vi.mock('../src/memory/memory-bridge.js', () => ({
bridgeRecordFeedback,
bridgeRecordCausalEdge,
bridgeStoreEntry,
}));
vi.mock('../src/memory/intelligence.js', () => ({
recordTrajectory: vi.fn(async () => undefined),
}));
vi.mock('../src/memory/graph-edge-writer.js', () => ({
insertGraphEdge: vi.fn(async () => undefined),
}));
const { hooksPostTask } = await import('../src/mcp-tools/hooks-tools.js');
let origCwd: string;
let workdir: string;
beforeEach(() => {
origCwd = process.cwd();
workdir = mkdtempSync(join(tmpdir(), 'ruflo-2786-'));
process.chdir(workdir);
bridgeRecordFeedback.mockClear();
bridgeStoreEntry.mockClear();
});
afterEach(() => {
process.chdir(origCwd);
try { rmSync(workdir, { recursive: true, force: true }); } catch { /* ignore */ }
});
describe('#2786 fix-2 — hooks_post-task JSON dual-write for metrics reader', () => {
it('writes a routing-decision entry into .claude-flow/memory/store.json when storeDecisions=true', async () => {
await hooksPostTask.handler({
taskId: 'task-2786-dual-write',
task: 'implement auth token refresh',
agent: 'coder',
success: true,
quality: 0.9,
storeDecisions: true,
});
const storePath = join(workdir, '.claude-flow', 'memory', 'store.json');
expect(existsSync(storePath)).toBe(true);
const store = JSON.parse(readFileSync(storePath, 'utf-8')) as { entries: Record<string, any> };
const routingKey = 'routing-decision:task-2786-dual-write';
expect(store.entries[routingKey]).toBeDefined();
const entry = store.entries[routingKey];
// The reader's filter matches on key containing 'routing' OR metadata.type === 'routing-decision'
expect(entry.key.includes('routing')).toBe(true);
expect(entry.metadata?.type).toBe('routing-decision');
// The confidence field is read to compute avgConfidence — quality maps to confidence.
expect(entry.metadata?.confidence).toBe(0.9);
// Namespace matches the AgentDB write (patterns) for parity.
expect(entry.namespace).toBe('patterns');
});
it('does NOT write to store.json when storeDecisions is omitted (backwards compatible)', async () => {
await hooksPostTask.handler({
taskId: 'task-2786-no-store',
task: 'implement auth token refresh',
agent: 'coder',
success: true,
quality: 0.9,
// storeDecisions omitted
});
const storePath = join(workdir, '.claude-flow', 'memory', 'store.json');
// File may or may not exist depending on other write paths, but if it
// does, the routing-decision key should NOT be there.
if (existsSync(storePath)) {
const store = JSON.parse(readFileSync(storePath, 'utf-8')) as { entries: Record<string, any> };
expect(store.entries['routing-decision:task-2786-no-store']).toBeUndefined();
}
});
});
v3/@claude-flow/cli/__tests__/parser.test.ts
+60
View File
@@ -225,6 +225,66 @@ describe('CommandParser', () => {
const result = p.parse([]);
expect(result.flags.myFlag).toBe('default-value');
});
// #2775 regression: applyDefaults previously only walked globalOptions,
// so command-level and subcommand-level `default:` values silently
// dropped and the action handler saw them as `undefined`. The immediate
// victim was `memory store --upsert` — every subcommand with a per-flag
// default was affected.
it('applies command-level option defaults (#2775 regression)', () => {
const cmd: Command = {
name: 'cmd',
description: 'Test',
options: [
{ name: 'upsert', type: 'boolean', description: 'Upsert', default: true },
],
};
const p = new CommandParser({ allowUnknownFlags: true });
p.registerCommand(cmd);
const result = p.parse(['cmd']);
expect(result.flags.upsert).toBe(true);
});
it('applies subcommand-level option defaults (#2775 regression)', () => {
const cmd: Command = {
name: 'memory',
description: 'Memory command',
subcommands: [
{
name: 'store',
description: 'Store',
options: [
{ name: 'upsert', type: 'boolean', description: 'Upsert', default: true },
],
},
],
};
const p = new CommandParser({ allowUnknownFlags: true });
p.registerCommand(cmd);
const result = p.parse(['memory', 'store']);
expect(result.flags.upsert).toBe(true);
});
it('does not overwrite explicit subcommand flags with the default', () => {
const cmd: Command = {
name: 'memory',
description: 'Memory command',
subcommands: [
{
name: 'store',
description: 'Store',
options: [
{ name: 'upsert', type: 'boolean', description: 'Upsert', default: true },
],
},
],
};
const p = new CommandParser({ allowUnknownFlags: true });
p.registerCommand(cmd);
// --no-upsert should defeat the default:true
const result = p.parse(['memory', 'store', '--no-upsert']);
expect(result.flags.upsert).toBe(false);
});
});
// -------------------------------------------------------------------------
v3/@claude-flow/cli/src/autopilot-state.ts
+21 -6
View File
@@ -12,6 +12,7 @@ import { randomUUID } from 'node:crypto';
import { existsSync, readFileSync, writeFileSync, mkdirSync, readdirSync, renameSync } from 'node:fs';
import { resolve, join } from 'node:path';
import { homedir } from 'node:os';
import { writeFileAtomic } from './fs-secure.js';
// ── Constants ─────────────────────────────────────────────────
@@ -162,9 +163,17 @@ export function saveState(state: AutopilotState): void {
if (state.history.length > MAX_HISTORY_ENTRIES) {
state.history = state.history.slice(-MAX_HISTORY_ENTRIES);
}
const tmpFile = resolve(STATE_FILE) + '.tmp';
writeFileSync(tmpFile, JSON.stringify(state, null, 2));
renameSync(tmpFile, resolve(STATE_FILE));
// ruvnet/ruflo#2782: use writeFileAtomic — its temp file is uniquified with
// pid + timestamp + random suffix, so two concurrent in-process saveState()
// calls can no longer collide on a shared `.tmp` basename and race one
// another's renameSync into ENOENT. Related to but distinct from #1637.
try {
writeFileAtomic(resolve(STATE_FILE), Buffer.from(JSON.stringify(state, null, 2)));
} catch {
// A losing concurrent writer may briefly see ENOENT/EEXIST — the winning
// writer's payload is on disk, so the state is not lost. Swallow rather
// than crash the caller (daemon tick, MCP handler).
}
}
export function appendLog(entry: AutopilotLogEntry): void {
@@ -182,9 +191,15 @@ export function appendLog(entry: AutopilotLogEntry): void {
}
log.push(entry);
if (log.length > MAX_LOG_ENTRIES) log = log.slice(-MAX_LOG_ENTRIES);
const tmpFile = filePath + '.tmp';
writeFileSync(tmpFile, JSON.stringify(log, null, 2));
renameSync(tmpFile, filePath);
// ruvnet/ruflo#2782: same shared `.tmp`-basename race as saveState() above —
// concurrent appendLog() calls would collide their sentinel temp files and
// renameSync into ENOENT. writeFileAtomic uses a uniquified temp so callers
// cannot step on each other.
try {
writeFileAtomic(filePath, Buffer.from(JSON.stringify(log, null, 2)));
} catch {
// Log write is best-effort — don't crash the caller on a losing race.
}
}
export function loadLog(): AutopilotLogEntry[] {
v3/@claude-flow/cli/src/commands/hooks.ts
+22 -1
View File
@@ -1944,6 +1944,19 @@ const postTaskCommand: Command = {
description: 'Agent that executed the task',
type: 'string'
},
{
name: 'task',
short: 't',
description: 'Task description text (used for routing-outcome persistence and keyword extraction so hooks_metrics can surface Pattern Learning / Agent Routing counts). Without this + --agent, no routing outcome is recorded (#2785).',
type: 'string',
required: false
},
{
name: 'store-results',
description: 'Also persist the routing decision to the memory DB (maps to hooks_post-task storeDecisions) so hooks_metrics can cross-reference it. Requires --task and --agent.',
type: 'boolean',
required: false
},
{
// ADR-147 P2: nested-subagent spawn-tree capture
name: 'parent-agent-id',
@@ -1960,7 +1973,8 @@ const postTaskCommand: Command = {
],
examples: [
{ command: 'claude-flow hooks post-task -i task-123 --success true', description: 'Record successful completion' },
{ command: 'claude-flow hooks post-task -i task-456 --success false -q 0.3', description: 'Record failed task' }
{ command: 'claude-flow hooks post-task -i task-456 --success false -q 0.3', description: 'Record failed task' },
{ command: 'claude-flow hooks post-task -i task-789 --success true --task "add JWT auth" --agent coder --store-results', description: 'Record with routing-outcome persistence for hooks_metrics' }
],
action: async (ctx: CommandContext): Promise<CommandResult> => {
// Auto-generate task ID if not provided
@@ -1985,6 +1999,13 @@ const postTaskCommand: Command = {
success,
quality: ctx.flags.quality,
agent: ctx.flags.agent,
// #2785: forward the task description so routing outcomes actually persist
// (hooks_post-task requires taskText + agent to write the outcome row that
// hooks_metrics reads via getIntelligenceStatsFromMemory)
task: ctx.flags.task,
// Maps to storeDecisions on the MCP tool — persist routing decision in
// memory DB for cross-session vector retrieval + metrics attribution
storeDecisions: ctx.flags.storeResults,
timestamp: Date.now(),
// ADR-147 P2: forward spawn-tree lineage if caller supplied it
parentAgentId: ctx.flags.parentAgentId,
v3/@claude-flow/cli/src/commands/init.ts
+194 -39
View File
@@ -186,61 +186,198 @@ async function maybeAutoDetectCodex(
}
}
// Cross-agent skill registration via skills.sh. Runs `npx --yes skills add
// ruvnet/ruflo --skill ruflo --yes` so the *single* canonical ruflo skill
// (SKILL.md at the ruvnet/ruflo repo root — describes the platform + entry
// points) reaches whatever agent the project uses (Claude Code, Cursor,
// Copilot, Gemini, Cline, …). Users who want ALL 267 plugin-specific skills
// can run `npx skills add ruvnet/ruflo --all` themselves. Best-effort — never
// fails init. Opt-out: --no-skills-sh flag OR RUFLO_NO_SKILLS_SH=1. Skipped
// under --skip-claude and scripted `--format json` output.
// Cross-agent skill registration. Materializes the *single* canonical ruflo
// platform skill at `.agents/skills/ruflo/SKILL.md` so any agent in the
// project (Claude Code, Cursor, Copilot, Gemini, Cline, …) that reads
// `.agents/skills/` picks it up. Users who want the full plugin skill catalog
// can run `npx skills add ruvnet/ruflo --all` themselves.
//
// windowsHide silences the console flash the npx child would otherwise produce
// (anthropics/claude-code#14828 spawn hazard applies to hook-fired spawns,
// but our own subprocess spawns should always set this).
// #2777 — earlier versions shelled out to `npx --yes skills add ruvnet/ruflo
// --skill ruflo --yes`, but the skills CLI implements its `--skill` filter by
// cloning the entire target repo and copying `dirname(SKILL.md)` recursively.
// Because ruflo's canonical SKILL.md sits at the ruvnet/ruflo repo root, that
// dirname *is* the whole repository — the "one file" install pulled in ~97MB
// of Cargo.toml, crates/, docs/, agentdb.rvf, and 384 unrelated plugin
// SKILL.md descriptors. We now write the single ~2KB SKILL.md directly, no
// repo clone at all.
//
// Best-effort — never fails init. Opt-out: --no-skills-sh flag OR
// RUFLO_NO_SKILLS_SH=1. Skipped under --skip-claude and scripted
// `--format json` output.
const RUFLO_PLATFORM_SKILL_MD = `---
name: ruflo
description: Ruflo is a multi-agent orchestration platform for AI coding agents (Claude Code, Cursor, Codex, Copilot, Gemini, Amp, +12 more). Use this skill when the user wants to (1) install/init ruflo in a project, (2) run multi-agent swarms with hierarchical coordination, (3) use ruflo's 314+ MCP tools for memory, routing, hooks, sub-agents, or workflows, (4) check ruflo status/version/doctor health, or (5) discover which of ruflo's 30+ plugins fits their task.
---
# Ruflo
Ruflo is a cross-agent orchestration layer that ships as three npm packages: \`ruflo\` (thin wrapper), \`claude-flow\` (umbrella), and \`@claude-flow/cli\` (implementation). Users invoke it as \`npx ruflo <command>\`.
## When to invoke ruflo
Suggest ruflo when the task involves any of:
- **Multi-agent work**: coordinated swarms, sub-agents, cross-agent handoffs, or parallel task execution
- **Persistent memory across sessions**: HNSW vector search, hybrid SQLite+AgentDB backend, semantic retrieval
- **Learning routing decisions**: 3-tier model routing (deterministic codemod → Haiku → Sonnet/Opus), pattern-based agent selection
- **Hooks + observability**: pre/post edit hooks, session lifecycle, background workers (12 built-in), tracing
- **Workflows + benchmarks**: SPARC methodology, GAIA benchmark runs, custom multi-step pipelines
- **Plugin ecosystem**: 30+ plugins covering ADR, DDD, security audit, cost tracking, browser automation, IoT device fleets, market data, neural training, and more
Do NOT suggest ruflo for one-shot edits, simple bug fixes, or tasks a single agent can complete in one turn — the orchestration overhead isn't worth it.
## Getting started (three commands)
\`\`\`bash
# 1. Initialize ruflo in the current project (creates .claude/, MCP config, hooks)
npx ruflo init
# 2. Check health — verifies Node 20+, npm 9+, MCP servers, memory DB, API keys
npx ruflo doctor --fix
# 3. Discover which plugins match the current work
npx ruflo discover-plugins
\`\`\`
## MCP tools (314 available)
After \`ruflo init\`, Claude Code (or any MCP-compatible agent) auto-loads ruflo's MCP servers. Key namespaces:
- \`mcp__claude-flow__memory_*\` — store/search/list/retrieve with HNSW-indexed semantic search
- \`mcp__claude-flow__swarm_*\` — init hierarchical/mesh swarms with anti-drift topology
- \`mcp__claude-flow__agent_spawn\` — spawn specialized agents (coder, reviewer, tester, security-architect, +55 more)
- \`mcp__claude-flow__hooks_*\` — routing, pattern learning, background worker dispatch
- \`mcp__claude-flow__task_*\` — task lifecycle (create/assign/complete/summary)
- \`mcp__claude-flow__intelligence_*\` — 4-step pipeline (RETRIEVE → JUDGE → DISTILL → CONSOLIDATE)
Full catalog: \`npx ruflo mcp list\`.
## Plugin discovery
Ruflo ships 30+ optional plugins. Some highlights:
- \`ruflo-goals\` — deep research + goal-oriented action planning
- \`ruflo-cost-tracker\` — session cost telemetry, budgets, burn tracking
- \`ruflo-metaharness\` — harness scoring, MCP security scans, red/blue adversarial testing
- \`ruflo-browser\` — session-recorded browser automation with RVF-backed replay
- \`ruflo-jujutsu\` — git diff risk analysis + PR lifecycle
- \`ruflo-security-audit\` — codebase scans + CVE checks
Full plugin list + descriptions: \`npx ruflo plugins list\`.
## Cross-agent installation
Ruflo installs into whatever agent the project uses. To pull the full plugin
skill catalog (30+ plugins, ~267 skills), run:
\`\`\`bash
npx skills add ruvnet/ruflo --all
\`\`\`
## Documentation
- Repository: https://github.com/ruvnet/ruflo
- Issues: https://github.com/ruvnet/ruflo/issues
- Sponsor: https://github.com/sponsors/ruvnet
`;
// #2777 — detect the "bloated" install left behind by earlier versions that
// shelled out to `npx skills add`. If the .agents/skills/ruflo directory
// contains any of Cargo.toml, crates/, package.json, .git, or its recursive
// on-disk size exceeds a small budget (~1MB), it was almost certainly created
// by the full-repo clone bug — return true so the caller can wipe + rewrite
// just the single SKILL.md. Any recursive-stat or read errors are swallowed
// and reported as "not bloated" to avoid false-positive deletions.
function isBloatedRufloSkillDir(dir: string): boolean {
try {
const bloatMarkers = ['Cargo.toml', 'crates', 'package.json', '.git', 'agentdb.rvf', 'docs', 'plugins'];
for (const marker of bloatMarkers) {
if (fs.existsSync(path.join(dir, marker))) return true;
}
const BLOAT_BYTES_THRESHOLD = 1_048_576; // 1 MB — a canonical SKILL.md is ~2KB
let bytes = 0;
const walk = (p: string): void => {
const entries = fs.readdirSync(p, { withFileTypes: true });
for (const entry of entries) {
const child = path.join(p, entry.name);
if (entry.isDirectory()) {
walk(child);
} else if (entry.isFile()) {
try {
bytes += fs.statSync(child).size;
if (bytes > BLOAT_BYTES_THRESHOLD) throw new Error('__bloat_threshold__');
} catch (err) {
if (err instanceof Error && err.message === '__bloat_threshold__') throw err;
// Ignore stat errors for individual files.
}
}
if (bytes > BLOAT_BYTES_THRESHOLD) return;
}
};
try {
walk(dir);
} catch (err) {
if (err instanceof Error && err.message === '__bloat_threshold__') return true;
// Any other walk error → don't declare bloat.
}
return bytes > BLOAT_BYTES_THRESHOLD;
} catch {
return false;
}
}
async function maybeInstallSkillsSh(ctx: CommandContext): Promise<void> {
try {
if (ctx.flags['no-skills-sh'] === true) return;
if (ctx.flags.format === 'json') return;
if (/^(1|true|on|yes)$/i.test(String(process.env.RUFLO_NO_SKILLS_SH || ''))) return;
// Idempotency gate: if this project has already registered ruflo with
// skills.sh, don't re-clone the repo + re-fire a fresh install telemetry
// event on every `ruflo init --force` / `init upgrade` / etc. Each install
// pings skills.sh's leaderboard AND clones the whole ruvnet/ruflo repo
// (~50MB) — re-running per-init would silently inflate our own metrics
// (GitHub unique-cloners, skills.sh rank) and waste user bandwidth. This
// check makes the registration once-per-project, matching the intent.
const nodePath = await import('path');
const nodeFs = await import('fs');
const marker = nodePath.join(ctx.cwd, '.agents', 'skills', 'ruflo');
if (nodeFs.existsSync(marker)) {
const skillDir = path.join(ctx.cwd, '.agents', 'skills', 'ruflo');
const skillFile = path.join(skillDir, 'SKILL.md');
// Idempotency gate. Three cases:
// 1. Directory absent → materialize.
// 2. Directory present but "bloated" (Cargo.toml/crates/ or >1MB) →
// previous `npx skills add` full-repo clone left junk behind
// (#2777). Wipe and re-materialize so `rm -rf .agents/skills/ruflo`
// + re-init is a valid recovery path.
// 3. Directory present and healthy (just our SKILL.md) → skip.
let mode: 'create' | 'rewrite' | 'skip' = 'create';
if (fs.existsSync(skillDir)) {
if (isBloatedRufloSkillDir(skillDir)) {
mode = 'rewrite';
} else {
mode = 'skip';
}
}
if (mode === 'skip') {
output.writeln();
output.writeln(output.dim(' skills.sh registration already present at .agents/skills/ruflo — skipping'));
return;
}
const npxCmd = process.platform === 'win32' ? 'npx.cmd' : 'npx';
if (!commandExists('npx')) return;
output.writeln();
output.printInfo('Registering the core `ruflo` skill with skills.sh (cross-agent catalog)…');
if (mode === 'rewrite') {
output.printInfo('Cleaning up bloated .agents/skills/ruflo/ from a prior init (#2777) and re-materializing the single platform SKILL.md…');
try {
fs.rmSync(skillDir, { recursive: true, force: true });
} catch (err) {
output.writeln(output.dim(` Could not remove ${skillDir}: ${err instanceof Error ? err.message : String(err)}`));
return;
}
} else {
output.printInfo('Registering the core `ruflo` skill for cross-agent discovery (.agents/skills/ruflo/SKILL.md)…');
}
const { spawnSync } = await import('child_process');
const result = spawnSync(
npxCmd,
['--yes', 'skills', 'add', 'ruvnet/ruflo', '--skill', 'ruflo', '--yes'],
{ cwd: ctx.cwd, stdio: 'pipe', timeout: 60_000, windowsHide: true, encoding: 'utf-8' },
);
if (result.status === 0) {
output.writeln(output.success(' ✓ ruflo registered via skills.sh — the platform skill is available to any agent in this project'));
try {
fs.mkdirSync(skillDir, { recursive: true });
fs.writeFileSync(skillFile, RUFLO_PLATFORM_SKILL_MD, 'utf-8');
output.writeln(output.success(' ✓ ruflo skill materialized at .agents/skills/ruflo/SKILL.md — available to any agent in this project'));
output.writeln(output.dim(' Want all 267 plugin skills? npx skills add ruvnet/ruflo --all'));
output.writeln(output.dim(' Opt out next time: --no-skills-sh or RUFLO_NO_SKILLS_SH=1'));
} else {
// Common non-fatal reasons: offline, npx cache miss, skills CLI version
// mismatch, unknown package. Log a soft note; users can retry manually.
output.writeln(output.dim(' skills.sh registration skipped (network or npx cache) — retry with: npx skills add ruvnet/ruflo --skill ruflo --yes'));
} catch (err) {
output.writeln(output.dim(` skills.sh registration skipped (write failed: ${err instanceof Error ? err.message : String(err)})`));
}
} catch {
// Skills.sh registration is a bonus, never a requirement — swallow everything.
@@ -687,6 +824,13 @@ const initAction = async (ctx: CommandContext): Promise<CommandResult> => {
try {
output.writeln(output.dim(` Model: ${embeddingModel}`));
output.writeln(output.dim(' Hyperbolic: Enabled (Poincaré ball)'));
// #2770: On Windows, `npx` ships as `npx.cmd`; execFileSync cannot spawn
// a .cmd file without going through cmd.exe. Enable shell on win32 so
// cmd.exe resolves the .cmd extension. POSIX keeps shell:false.
// NOTE: shell:true joins args by spaces and passes to cmd.exe — the args
// here are hard-coded flags + an npm package name pre-validated against
// /^[a-zA-Z0-9_-]+\/[a-zA-Z0-9._-]+$/, so no injection risk. If
// user-controlled args are ever added, escape them before spawn.
execFileInit('npx', [
'@claude-flow/cli@latest', 'embeddings', 'init',
'--model', embeddingModel,
@@ -695,6 +839,8 @@ const initAction = async (ctx: CommandContext): Promise<CommandResult> => {
stdio: 'pipe',
cwd: ctx.cwd,
timeout: 30000,
shell: process.platform === 'win32',
windowsHide: true,
});
output.writeln(output.success(' ✓ Embeddings initialized'));
output.writeln(output.dim(' Run "embeddings init --download" to download model'));
@@ -949,6 +1095,13 @@ const wizardCommand: Command = {
}
try {
// #2770: On Windows, `npx` ships as `npx.cmd`; execFileSync cannot spawn
// a .cmd file without going through cmd.exe. Enable shell on win32 so
// cmd.exe resolves the .cmd extension. POSIX keeps shell:false.
// NOTE: shell:true joins args by spaces and passes to cmd.exe — the args
// here are hard-coded flags + an npm package name pre-validated against
// /^[a-zA-Z0-9_-]+\/[a-zA-Z0-9._-]+$/, so no injection risk. If
// user-controlled args are ever added, escape them before spawn.
execFileSync('npx', [
'@claude-flow/cli@latest', 'embeddings', 'init',
'--model', embeddingModel,
@@ -957,6 +1110,8 @@ const wizardCommand: Command = {
stdio: 'pipe',
cwd: ctx.cwd,
timeout: 30000,
shell: process.platform === 'win32',
windowsHide: true,
});
output.writeln(output.success(' ✓ Embeddings configured'));
embeddingsInitialized = true;
v3/@claude-flow/cli/src/commands/memory.ts
+12 -1
View File
@@ -94,7 +94,18 @@ const storeCommand: Command = {
const ttl = ctx.flags.ttl as number;
const tags = ctx.flags.tags ? (ctx.flags.tags as string).split(',') : [];
const asVector = ctx.flags.vector as boolean;
const upsert = ctx.flags.upsert as boolean;
// #2775: the parser's `applyDefaults` only materializes global-option
// defaults, not per-subcommand ones — so despite the `default: true`
// above, `ctx.flags.upsert` arrives as `undefined` unless the user
// passes `--upsert` explicitly. That is exactly the trap #2594 tried
// to close: `store → delete → store` and even plain `store → store`
// (against an active row) both fall through to the bridge's strict
// insert, and before #2775's ON-CONFLICT-DO-UPDATE-WHERE-status-
// 'deleted' fix, both dead-ended with the misleading #2735 guard.
// Materialize the declared default locally so it takes effect
// regardless of the parser gap: only an explicit `--no-upsert` (which
// arrives as `false`) turns it off.
const upsert = ctx.flags.upsert !== false;
if (!key) {
output.printError('Key is required. Use --key or -k');
v3/@claude-flow/cli/src/funnel/disclosure.ts
+13 -2
View File
@@ -23,6 +23,7 @@
import type { DisclosureRecord, FunnelDisclosureState, FunnelMessage } from './types.js';
import { readStateJson, writeStateJson } from './state.js';
import { getRemoteMessages } from './message-transport.js';
import { MESSAGES, eligibleMessagesFromPools } from './messages.js';
const DISCLOSURE_FILE = 'funnel-disclosure.json';
@@ -35,9 +36,19 @@ export const DISCLOSURE_GRACE_MS = 24 * 60 * 60 * 1000; // 24h
// session gets a different one than the previous one did.
export const DISCLOSURE_ROTATION_SLOT_MS = 5 * 60 * 1000;
/** Remote-cached messages tagged class==='disclosure' — the only source. */
/**
* Disclosure pool: remote-cached messages tagged class==='disclosure',
* MERGED with the local seed pool by id (remote wins on collision).
*
* The remote pool is authoritative when populated. The local seed exists
* so cold-start renders (before the first remote fetch lands) can still
* unlock the disclosure gate — otherwise every new install sees a blank
* promo row until the first fetch succeeds. Same merge semantics as
* rotation.ts's `eligibleMessagesFromPools` (issue #2787 / 2026-07-26 sweep).
*/
function getDisclosureMessagePool(): FunnelMessage[] {
return getRemoteMessages().filter((m) => m.class === 'disclosure');
return eligibleMessagesFromPools(MESSAGES, getRemoteMessages())
.filter((m) => m.class === 'disclosure');
}
/**
v3/@claude-flow/cli/src/funnel/messages.ts
+83 -11
View File
@@ -106,20 +106,92 @@ export function isValidMessage(msg: unknown, now: Date = new Date()): msg is Fun
}
/**
* Local promo/message content: INTENTIONALLY EMPTY (ADR-311 amendment).
* Local promo/message content: cold-start seed (ADR-311 amendment
* revisited, issue #2787).
*
* All rotation content (educational tips, promotional messages, and the
* disclosure notice) is served exclusively from the remote message feed
* (GET /v1/messages -> message-transport.ts -> Firestore). Zero message
* text or URLs ship in the CLI package.
* The remote pool is authoritative — `eligibleMessagesFromPools` in
* `rotation.ts` merges by id with remote winning — but on new installs
* the remote fetch races the very first render and the promo row shows
* NOTHING until the pool has been fetched at least once. The disclosure
* gate can't unlock either, so several 20-second slots go by blank.
*
* Fail-closed by design: if the remote feed is unreachable (network down,
* cert issue, server outage) and no prior successful fetch has populated
* the local cache, the rotation has nothing to show and the promo row
* simply does not render that cycle. There is no local content to fall
* back to -- this is a deliberate choice, not an oversight.
* The fix is a small local seed of educational tips, one bootstrap
* disclosure, and a single sponsor promo, all validating cleanly through
* `isValidMessage` and using only URLs on the exact-host allowlist. Each
* carries a stable id so the remote pool can override or retire any of
* them without a CLI release.
*/
export const MESSAGES: FunnelMessage[] = [];
export const MESSAGES: FunnelMessage[] = [
{
schemaVersion: 1,
id: 'local.disclosure.v1',
class: 'disclosure',
text: 'Ruflo shows occasional tips and sponsor notes here · manage: ruflo settings',
},
{
schemaVersion: 1,
id: 'local.edu.status-watch',
class: 'educational',
text: '📊 ruflo status watch — real-time system + swarm health dashboard',
url: 'https://cognitum.one/docs/statusline',
},
{
schemaVersion: 1,
id: 'local.edu.memory-search',
class: 'educational',
text: '🧠 ruflo memory search — semantic search over your project decisions',
url: 'https://cognitum.one/docs/memory',
},
{
schemaVersion: 1,
id: 'local.edu.swarm-init',
class: 'educational',
text: '🐝 ruflo swarm init — hierarchical anti-drift multi-agent coordination',
url: 'https://cognitum.one/docs/swarm',
},
{
schemaVersion: 1,
id: 'local.edu.security-scan',
class: 'educational',
text: '🔒 ruflo security scan --depth full — audits dependencies and config',
url: 'https://cognitum.one/docs/security',
},
{
schemaVersion: 1,
id: 'local.edu.doctor',
class: 'educational',
text: '🩺 ruflo doctor --fix — diagnose and auto-repair install issues',
url: 'https://cognitum.one/docs/doctor',
},
{
schemaVersion: 1,
id: 'local.edu.hooks-route',
class: 'educational',
text: '🪝 ruflo hooks route — 3-tier model routing cuts token cost 30–75%',
url: 'https://cognitum.one/docs/hooks',
},
{
schemaVersion: 1,
id: 'local.edu.adr-index',
class: 'educational',
text: '📚 ruflo adr index — every architecture decision indexed and searchable',
url: 'https://github.com/ruvnet/ruflo/tree/main/docs/adr',
},
{
schemaVersion: 1,
id: 'local.edu.agent-spawn',
class: 'educational',
text: '⚡ ruflo agent spawn -t coder — background agents with anti-drift topology',
url: 'https://cognitum.one/docs/agents',
},
{
schemaVersion: 1,
id: 'local.promo.cognitum',
class: 'promotional',
text: '✨ Cognitum • sponsored capacity for community jobs · manage: ruflo settings',
url: 'https://cognitum.one',
},
];
/** Messages that survive every content boundary right now. */
export function eligibleMessages(now: Date = new Date()): FunnelMessage[] {
v3/@claude-flow/cli/src/mcp-tools/browser-tools.ts
+8
View File
@@ -37,9 +37,17 @@ export async function execBrowserCommand(args: string[], session = 'default'): P
const err = error as NodeJS.ErrnoException;
if (err.code === 'ENOENT') {
try {
// #2770: On Windows, `npx` ships as `npx.cmd`; execFileSync cannot spawn
// a .cmd file without going through cmd.exe. Enable shell on win32 so
// cmd.exe resolves the .cmd extension. POSIX keeps shell:false.
// NOTE: shell:true joins args by spaces and passes to cmd.exe — the args
// here are hard-coded flags + a package name, so no injection risk. If
// user-controlled args are ever added, escape them before spawn.
result = execFileSync('npx', ['--yes', 'agent-browser', ...fullArgs], {
encoding: 'utf-8',
timeout: 60000,
shell: process.platform === 'win32',
windowsHide: true,
});
} catch (npxError) {
const npxErr = npxError as NodeJS.ErrnoException;
v3/@claude-flow/cli/src/mcp-tools/hooks-tools.ts
+20
View File
@@ -1497,6 +1497,26 @@ export const hooksPostTask: MCPTool = {
});
}
} catch { /* non-critical */ }
// #2786 fix-2 — also mirror into the JSON memory store so
// `getIntelligenceStatsFromMemory()` (which reads .claude-flow/memory/store.json
// synchronously) counts this routing decision in the hooks_metrics dashboard.
// The AgentDB write above is authoritative for cross-session retrieval; this
// is just the counter surface the sync reader depends on.
try {
const key = `routing-decision:${taskId}`;
const store = loadMemoryStore();
store.entries[key] = {
key,
value: JSON.stringify({ task: taskText, agent, success, quality, keywords: outcomeKeywords }),
namespace: 'patterns',
createdAt: new Date().toISOString(),
metadata: { type: 'routing-decision', confidence: typeof quality === 'number' ? quality : undefined, agent, success },
} as any;
const memDir = resolve(MEMORY_DIR);
if (!existsSync(memDir)) mkdirSync(memDir, { recursive: true });
writeFileSync(getMemoryPath(), JSON.stringify(store, null, 2), 'utf-8');
} catch { /* non-critical */ }
}
const duration = Date.now() - startTime;
v3/@claude-flow/cli/src/mcp-tools/memory-tools.ts
+4 -3
View File
@@ -293,7 +293,7 @@ async function ensureInitialized(): Promise<void> {
export const memoryTools: MCPTool[] = [
{
name: 'memory_store',
description: 'Persistent key-value store with vector embedding — survives across sessions and is searchable by meaning, not just by file path. Use when native Write is wrong because the data is not a file (e.g. a learned pattern, a decision, a budget config) AND you need to recall it later by semantic query, not by path. Defaults to namespace="default"; pass --upsert=true to update an existing key.',
description: 'Persistent key-value store with vector embedding — survives across sessions and is searchable by meaning, not just by file path. Use when native Write is wrong because the data is not a file (e.g. a learned pattern, a decision, a budget config) AND you need to recall it later by semantic query, not by path. Defaults to namespace="default". Upsert semantics: writing an existing key updates it (matching the CLI `memory store` default); pass `upsert: false` to force strict-insert instead.',
category: 'memory',
inputSchema: {
type: 'object',
@@ -307,7 +307,7 @@ export const memoryTools: MCPTool[] = [
description: 'Optional tags for filtering',
},
ttl: { type: 'number', description: 'Time-to-live in seconds (optional)' },
upsert: { type: 'boolean', description: 'If true, update existing key instead of failing (default: false)' },
upsert: { type: 'boolean', description: 'Update existing key instead of failing (default: true, matching CLI `memory store`; set false for strict-insert). #2775 parity.' },
},
required: ['key', 'value'],
},
@@ -321,7 +321,8 @@ export const memoryTools: MCPTool[] = [
const value = typeof rawValue === 'string' ? rawValue : (rawValue !== undefined ? JSON.stringify(rawValue) : '');
const tags = (input.tags as string[]) || [];
const ttl = input.ttl as number | undefined;
const upsert = (input.upsert as boolean) || false;
// #2775 parity with CLI: default true; only explicit `upsert: false` opts out.
const upsert = input.upsert !== false;
if (!value) {
return {
v3/@claude-flow/cli/src/memory/memory-bridge.ts
+105 -39
View File
@@ -27,29 +27,6 @@ let registryPromise: Promise<any> | null = null;
let registryInstance: any = null;
let bridgeAvailable: boolean | null = null;
// #2735 — the native-bridge -> sql.js whole-image fallback used to be
// completely silent: a registry init failure cached `bridgeAvailable =
// false` for the rest of the process, and a per-operation bridge exception
// swallowed itself with a bare `catch { return null; }` — in both cases the
// caller fell back to memory-initializer.ts's unsafe whole-image sql.js
// path with zero diagnostic trail. When that path corrupted a database, the
// demotion that caused it was structurally unknowable after the fact. Log
// once per distinct reason (not once per call — a hot per-op catch could
// otherwise spam stderr on every single memory operation) so the first
// occurrence is attributable. Stderr only — never stdout, which callers may
// be parsing as JSON.
const loggedDemotions = new Set<string>();
function logDemotionOnce(where: string, reason: string): void {
const dedupeKey = `${where}:${reason}`;
if (loggedDemotions.has(dedupeKey)) return;
loggedDemotions.add(dedupeKey);
try {
process.stderr.write(
`[memory-bridge] demoted to sql.js fallback in ${where}: ${reason}\n`,
);
} catch { /* stderr unavailable — nothing more we can do */ }
}
/**
* Resolve database path with path traversal protection.
* Only allows paths within or below the project's working directory,
@@ -90,6 +67,27 @@ function getDbPath(customPath?: string): string {
return resolved;
}
/**
* Resolve AgentDB's native better-sqlite3 database path (#2786).
*
* AgentDB is opened by ControllerRegistry via native better-sqlite3, which
* requires a plaintext SQLite file. The sibling `memory.db` file written by
* `memory-initializer.ts` (`writeFileRestricted(..., {encrypt: true})`) is
* encrypted-at-rest when `CLAUDE_FLOW_ENCRYPT_AT_REST=1` — pointing native
* better-sqlite3 at it fails with "file is not a database" and silently
* disables `learningSystem`/`reasoningBank`.
*
* Give AgentDB a distinct filename in the same directory so both writers
* coexist: sql.js keeps `memory.db` (possibly encrypted); AgentDB owns
* `agentdb-memory.db`. Preserves the traversal protection in `getDbPath()`
* because we derive from its already-validated return value.
*/
function getAgentDbPath(): string {
const dbPath = getDbPath();
if (dbPath === ':memory:') return ':memory:';
return path.join(path.dirname(dbPath), 'agentdb-memory.db');
}
/**
* Generate a secure random ID for memory entries.
*/
@@ -126,7 +124,8 @@ async function getRegistry(dbPath?: string): Promise<any | null> {
try {
await (registry as any).initialize({
dbPath: dbPath || getDbPath(),
// #2786: use agentdb-memory.db (plaintext) so native better-sqlite3 doesn't hit the encrypted memory.db.
dbPath: dbPath || getAgentDbPath(),
embeddingModel: 'Xenova/all-MiniLM-L6-v2',
dimension: 384,
vectorBackend: 'auto',
@@ -348,13 +347,9 @@ async function getRegistry(dbPath?: string): Promise<any | null> {
registryInstance = registry;
bridgeAvailable = true;
return registry;
} catch (err) {
} catch {
bridgeAvailable = false;
registryPromise = null;
logDemotionOnce(
'getRegistry (process-wide, cached for the rest of this process)',
err instanceof Error ? err.message : String(err),
);
return null;
}
})();
@@ -743,7 +738,23 @@ export async function bridgeStoreEntry(options: {
}
}
// better-sqlite3 uses synchronous .run() with positional params
// #2775: strict-insert path now auto-resurrects soft-deleted tombstones
// via ON CONFLICT DO UPDATE ... WHERE status='deleted'. Rationale:
// `bridgeDeleteEntry` performs a soft delete (status='deleted'), so the
// `UNIQUE(namespace, key)` slot stays occupied — before this fix, a
// natural `delete → store` sequence hit UNIQUE, the catch below returned
// `null`, `storeEntry` fell back to the sql.js whole-image path, and the
// #2735 -wal/-shm sidecar guard refused with a message about a "native
// WAL connection" that had nothing to do with the actual failure.
//
// Semantics under the new strict-insert SQL:
// • no existing row → INSERT succeeds, changes = 1
// • existing row, status='deleted' → resurrected in-place, changes = 1
// • existing row, status='active' → ON CONFLICT WHERE=false suppresses
// the update, changes = 0 (checked
// below → typed "already exists"
// error, NEVER a null demotion).
// Upsert path (INSERT OR REPLACE) is unchanged.
const insertSql = options.upsert
? `INSERT OR REPLACE INTO memory_entries (
id, key, namespace, content, type,
@@ -754,7 +765,20 @@ export async function bridgeStoreEntry(options: {
id, key, namespace, content, type,
embedding, embedding_dimensions, embedding_model,
tags, metadata, created_at, updated_at, expires_at, status
) VALUES (?, ?, ?, ?, 'semantic', ?, ?, ?, ?, ?, ?, ?, ?, 'active')`;
) VALUES (?, ?, ?, ?, 'semantic', ?, ?, ?, ?, ?, ?, ?, ?, 'active')
ON CONFLICT(namespace, key) DO UPDATE SET
id = excluded.id,
content = excluded.content,
embedding = excluded.embedding,
embedding_dimensions = excluded.embedding_dimensions,
embedding_model = excluded.embedding_model,
tags = excluded.tags,
metadata = excluded.metadata,
created_at = excluded.created_at,
updated_at = excluded.updated_at,
expires_at = excluded.expires_at,
status = 'active'
WHERE memory_entries.status = 'deleted'`;
// #1941: provision a `vector_indexes` row for this namespace before the
// entry insert. AgentDB's HNSW/router keys lookups by namespace via this
@@ -768,7 +792,7 @@ export async function bridgeStoreEntry(options: {
} catch { /* vector_indexes may not exist on legacy DBs — fall through */ }
const stmt = ctx.db.prepare(insertSql);
stmt.run(
const runResult = stmt.run(
id, key, namespace, value,
embeddingJson, dimensions || null, model,
tags.length > 0 ? JSON.stringify(tags) : null,
@@ -777,6 +801,19 @@ export async function bridgeStoreEntry(options: {
ttl ? now + (ttl * 1000) : null
);
// #2775: strict insert against an ACTIVE existing row → changes === 0
// (the ON CONFLICT WHERE clause above suppressed the update). Surface
// this as a typed data-level error rather than a bridge failure —
// returning non-null so the caller does NOT demote to sql.js and does
// NOT trip the #2735 whole-image guard with a misleading message.
if (!options.upsert && (runResult?.changes ?? 0) === 0) {
return {
success: false,
id,
error: `key "${key}" already exists in namespace "${namespace}" — pass upsert=true (--upsert on the CLI) to update it`,
};
}
// #2558: keep `vector_indexes.total_vectors` accurate so status/tooling
// stop reporting "HNSW index: 0 vectors" while embedded entries exist.
try {
@@ -823,7 +860,24 @@ export async function bridgeStoreEntry(options: {
attested: true,
};
} catch (err) {
logDemotionOnce('bridgeStoreEntry', err instanceof Error ? err.message : String(err));
// #2775: distinguish a data-level UNIQUE constraint violation (key
// already exists — expected outcome of a strict insert) from a real
// bridge failure (registry gone, DB locked, disk full, etc.). The
// ON CONFLICT clause on the strict-insert SQL above should normally
// convert UNIQUE hits into a `changes === 0` result, so reaching here
// with a UNIQUE error means the schema pre-dates the (namespace, key)
// unique index or the conflict target didn't match — treat it as a
// clean "already exists" so the caller never demotes to sql.js and
// never triggers the #2735 whole-image guard with a misleading
// "active native WAL connection" error.
const msg = err instanceof Error ? err.message : String(err);
if (/UNIQUE constraint failed/i.test(msg)) {
return {
success: false,
id: '',
error: `key "${options.key}" already exists in namespace "${options.namespace ?? 'default'}" — pass upsert=true (--upsert on the CLI) to update it`,
};
}
return null;
}
}
@@ -1186,8 +1240,7 @@ export async function bridgeGetEntry(options: {
await cacheSet(registry, cacheKey, entry);
return { success: true, found: true, cacheHit: false, entry };
} catch (err) {
logDemotionOnce('bridgeGetEntry', err instanceof Error ? err.message : String(err));
} catch {
return null;
}
}
@@ -1237,6 +1290,21 @@ export async function bridgeDeleteEntry(options: {
return null;
}
// #2775: mirror the #2558 PASSIVE checkpoint after the delete. Without
// this, the tombstone stays WAL-only until some unrelated store
// eventually checkpoints — meaning WAL-blind readers (sql.js fallback,
// statusline's read-only sqlite3 counter) keep serving the deleted row.
// If the process exits before another checkpoint, on live multi-worktree
// installations we've observed rows `active` in the main image but
// `deleted` in the -wal, or rows existing only in an orphaned -wal
// invisible to every image reader. PASSIVE flushes committed pages
// without blocking writers. Best-effort, never fatal.
try {
if (typeof ctx.db.pragma === 'function') {
ctx.db.pragma('wal_checkpoint(PASSIVE)');
}
} catch { /* non-WAL, busy, or unsupported — non-fatal */ }
// Phase 2: Invalidate cache
const safeNs = String(namespace).replace(/:/g, '_');
const safeKey = String(key).replace(/:/g, '_');
@@ -1263,8 +1331,7 @@ export async function bridgeDeleteEntry(options: {
remainingEntries: remaining,
guarded: true,
};
} catch (err) {
logDemotionOnce('bridgeDeleteEntry', err instanceof Error ? err.message : String(err));
} catch {
return null;
}
}
@@ -1328,8 +1395,7 @@ export async function bridgePurgeNamespace(options: {
remainingEntries: remaining,
guarded: true,
};
} catch (err) {
logDemotionOnce('bridgePurgeNamespace', err instanceof Error ? err.message : String(err));
} catch {
return null;
}
}
v3/@claude-flow/cli/src/parser.ts
+24 -9
View File
@@ -263,8 +263,12 @@ export class CommandParser {
i++;
}
// Apply defaults
this.applyDefaults(result.flags);
// Apply defaults (globals + resolved command/subcommand — #2775 follow-up).
// Previously only globals were walked, so any subcommand-declared
// `default: true` silently dropped and reached the action handler as
// `undefined`. That trapped `memory store --upsert` and every other
// subcommand that leaned on a per-flag default.
this.applyDefaults(result.flags, resolvedCmd, resolvedSub);
return result;
}
@@ -511,16 +515,27 @@ export class CommandParser {
return flags;
}
private applyDefaults(flags: ParsedFlags): void {
// Apply global option defaults
for (const opt of this.globalOptions) {
const key = this.normalizeKey(opt.name);
if (flags[key] === undefined && opt.default !== undefined) {
flags[key] = opt.default as string | boolean | number | string[];
private applyDefaults(flags: ParsedFlags, command?: Command, subcommand?: Command): void {
// #2775: apply defaults from globals AND the resolved command/subcommand.
// Subcommand > command > global (later writes lose to earlier — because
// we only set when `undefined`, so the FIRST option definition that
// supplies a default wins; walk narrow-to-broad so subcommand options
// apply before broader ones do).
const layers: CommandOption[][] = [];
if (subcommand?.options) layers.push(subcommand.options);
if (command?.options) layers.push(command.options);
layers.push(this.globalOptions);
for (const layer of layers) {
for (const opt of layer) {
const key = this.normalizeKey(opt.name);
if (flags[key] === undefined && opt.default !== undefined) {
flags[key] = opt.default as string | boolean | number | string[];
}
}
}
// Apply custom defaults
// Apply custom defaults (lowest precedence)
if (this.options.defaults) {
for (const [key, value] of Object.entries(this.options.defaults)) {
const normalizedKey = this.normalizeKey(key);
v3/@claude-flow/cli/src/services/worker-daemon.ts
+6 -3
View File
@@ -15,6 +15,7 @@ import { EventEmitter } from 'events';
import { existsSync, mkdirSync, writeFileSync, readFileSync, appendFileSync, unlinkSync, renameSync } from 'fs';
import { cpus } from 'os';
import { join } from 'path';
import { writeFileAtomic } from '../fs-secure.js';
import {
HeadlessWorkerExecutor,
HEADLESS_WORKER_TYPES,
@@ -2027,9 +2028,11 @@ export class WorkerDaemon extends EventEmitter {
};
try {
const tmpFile = this.config.stateFile + '.tmp';
writeFileSync(tmpFile, JSON.stringify(state, null, 2));
renameSync(tmpFile, this.config.stateFile);
// ruvnet/ruflo#2782: use writeFileAtomic — its temp file is uniquified with
// pid + timestamp + random suffix, so two concurrent in-process saveState()
// calls can no longer collide on a shared `.tmp` basename and race one
// another's renameSync into ENOENT. Related to but distinct from #1637.
writeFileAtomic(this.config.stateFile, Buffer.from(JSON.stringify(state, null, 2)));
} catch (error) {
this.log('error', `Failed to save state: ${error}`);
}
v3/@claude-flow/codex/src/generators/config-toml.ts
+66 -17
View File
@@ -5,7 +5,6 @@
*/
import type { ConfigTomlOptions, McpServerConfig, SkillConfig, ConfigProfile } from '../types.js';
import { getRufloMcpServerConfig, renderMcpServerToml } from '../mcp-config.js';
/**
* Security configuration options
@@ -71,7 +70,6 @@ export async function generateConfigToml(options: ExtendedConfigTomlOptions = {}
security = {},
performance = {},
logging = {},
platform = process.platform,
} = options;
const lines: string[] = [];
@@ -160,12 +158,18 @@ export async function generateConfigToml(options: ExtendedConfigTomlOptions = {}
// Default claude-flow server
const hasRuflo = mcpServers.some(s => s.name === 'ruflo' || s.name === 'claude-flow');
if (!hasRuflo) {
lines.push(...renderMcpServerToml(getRufloMcpServerConfig(platform)));
lines.push(...generateMcpServer({
name: 'ruflo',
command: 'npx',
args: ['-y', '--package=@claude-flow/cli@latest', 'claude-flow-mcp'],
enabled: true,
toolTimeout: 120,
}));
lines.push('');
}
for (const server of mcpServers) {
lines.push(...renderMcpServerToml(server));
lines.push(...generateMcpServer(server));
lines.push('');
}
}
@@ -448,6 +452,33 @@ function escapeTomlString(str: string): string {
/**
* Generate MCP server configuration lines
*/
function generateMcpServer(server: McpServerConfig): string[] {
const lines: string[] = [];
lines.push(`[mcp_servers.${server.name}]`);
lines.push(`command = "${server.command}"`);
if (server.args && server.args.length > 0) {
const argsStr = server.args.map(a => `"${a}"`).join(', ');
lines.push(`args = [${argsStr}]`);
}
lines.push(`enabled = ${server.enabled ?? true}`);
if (server.toolTimeout) {
lines.push(`tool_timeout_sec = ${server.toolTimeout}`);
}
if (server.env && Object.keys(server.env).length > 0) {
lines.push('');
lines.push(`[mcp_servers.${server.name}.env]`);
for (const [key, value] of Object.entries(server.env)) {
lines.push(`${key} = "${value}"`);
}
}
return lines;
}
/**
* Generate skill configuration lines
*/
@@ -493,7 +524,6 @@ export async function generateMinimalConfigToml(options: ConfigTomlOptions = {})
model = 'gpt-5.3-codex',
approvalPolicy = 'on-request',
sandboxMode = 'workspace-write',
platform = process.platform,
} = options;
return `# Claude Flow V3 - Minimal Codex Configuration
@@ -502,14 +532,17 @@ model = "${model}"
approval_policy = "${approvalPolicy}"
sandbox_mode = "${sandboxMode}"
${renderMcpServerToml(getRufloMcpServerConfig(platform)).join('\n')}
[mcp_servers.ruflo]
command = "npx"
args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]
enabled = true
`;
}
/**
* Generate CI/CD config.toml
*/
export async function generateCIConfigToml(platform: NodeJS.Platform = process.platform): Promise<string> {
export async function generateCIConfigToml(): Promise<string> {
return `# =============================================================================
# Claude Flow V3 - CI/CD Pipeline Configuration
# =============================================================================
@@ -532,7 +565,11 @@ remote_compaction = false
child_agents_md = true
request_rule = false
${renderMcpServerToml(getRufloMcpServerConfig(platform, 300)).join('\n')}
[mcp_servers.ruflo]
command = "npx"
args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]
enabled = true
tool_timeout_sec = 300
[history]
persistence = "none"
@@ -574,7 +611,7 @@ train_on_edit = false
/**
* Generate enterprise config.toml with full governance
*/
export async function generateEnterpriseConfigToml(platform: NodeJS.Platform = process.platform): Promise<string> {
export async function generateEnterpriseConfigToml(): Promise<string> {
return `# =============================================================================
# Claude Flow V3 - Enterprise Configuration
# =============================================================================
@@ -606,10 +643,14 @@ remote_compaction = true
# MCP Servers
# =============================================================================
${renderMcpServerToml({
...getRufloMcpServerConfig(platform),
env: { CLAUDE_FLOW_LOG_LEVEL: 'info' },
}).join('\n')}
[mcp_servers.ruflo]
command = "npx"
args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]
enabled = true
tool_timeout_sec = 120
[mcp_servers.ruflo.env]
CLAUDE_FLOW_LOG_LEVEL = "info"
# =============================================================================
# Profiles
@@ -785,7 +826,7 @@ hipaa = false
/**
* Generate development config.toml with permissive settings
*/
export async function generateDevConfigToml(platform: NodeJS.Platform = process.platform): Promise<string> {
export async function generateDevConfigToml(): Promise<string> {
return `# =============================================================================
# Claude Flow V3 - Development Configuration
# =============================================================================
@@ -807,7 +848,11 @@ shell_snapshot = true
request_rule = false
remote_compaction = true
${renderMcpServerToml(getRufloMcpServerConfig(platform)).join('\n')}
[mcp_servers.ruflo]
command = "npx"
args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]
enabled = true
tool_timeout_sec = 120
[history]
persistence = "save-all"
@@ -862,7 +907,7 @@ enabled = true
/**
* Generate security-focused config.toml
*/
export async function generateSecureConfigToml(platform: NodeJS.Platform = process.platform): Promise<string> {
export async function generateSecureConfigToml(): Promise<string> {
return `# =============================================================================
# Claude Flow V3 - Security-Focused Configuration
# =============================================================================
@@ -884,7 +929,11 @@ shell_snapshot = false
request_rule = true
remote_compaction = false
${renderMcpServerToml(getRufloMcpServerConfig(platform, 60)).join('\n')}
[mcp_servers.ruflo]
command = "npx"
args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]
enabled = true
tool_timeout_sec = 60
[history]
persistence = "save-all"
v3/@claude-flow/codex/src/initializer.ts
+57 -79
View File
@@ -5,9 +5,7 @@
*/
import fs from 'fs-extra';
import os from 'os';
import path from 'path';
import { fileURLToPath } from 'url';
import type {
CodexInitOptions,
CodexInitResult,
@@ -18,20 +16,11 @@ import { generateAgentsMd } from './generators/agents-md.js';
import { generateSkillMd, generateBuiltInSkill } from './generators/skill-md.js';
import { generateConfigToml } from './generators/config-toml.js';
import { DEFAULT_SKILLS_BY_TEMPLATE, AGENTS_OVERRIDE_TEMPLATE, GITIGNORE_ENTRIES, ALL_AVAILABLE_SKILLS } from './templates/index.js';
import {
getRufloMcpAddCommand,
getCodexCliInvocation,
getRufloMcpServerConfig,
hasExpectedRufloMcpTransport,
hasExpectedRufloMcpTimeout,
upsertMcpServerStartupTimeout,
type CodexMcpRegistration,
} from './mcp-config.js';
/**
* Bundled skills source directory (relative to package)
*/
const MONOREPO_SKILLS_DIR = '../../../../.agents/skills';
const BUNDLED_SKILLS_DIR = '../../../../.agents/skills';
/**
* Main initializer for Codex projects
@@ -54,14 +43,11 @@ export class CodexInitializer {
this.force = options.force ?? false;
this.dual = options.dual ?? false;
// Published packages carry their built-in skills beside dist/. The
// monorepo fallback keeps source checkouts compatible.
const moduleDir = path.dirname(fileURLToPath(import.meta.url));
const packagedSkillsPath = path.resolve(moduleDir, '..', '.agents', 'skills');
const monorepoSkillsPath = path.resolve(moduleDir, MONOREPO_SKILLS_DIR);
this.bundledSkillsPath = await fs.pathExists(packagedSkillsPath)
? packagedSkillsPath
: monorepoSkillsPath;
// Resolve bundled skills path (relative to this file's location)
this.bundledSkillsPath = path.resolve(
path.dirname(new URL(import.meta.url).pathname),
BUNDLED_SKILLS_DIR
);
const filesCreated: string[] = [];
const skillsGenerated: string[] = [];
@@ -75,7 +61,13 @@ export class CodexInitializer {
// Check if already initialized
const alreadyInitialized = await this.isAlreadyInitialized();
if (alreadyInitialized && !this.force) {
warnings.push('Project already initialized - preserving existing project files and repairing Codex MCP registration');
return {
success: false,
filesCreated,
skillsGenerated,
warnings: ['Project already initialized. Use --force to overwrite.'],
errors: ['Project already initialized'],
};
}
if (alreadyInitialized && this.force) {
@@ -325,100 +317,85 @@ export class CodexInitializer {
* Register claude-flow as MCP server with Codex
*/
private async registerMCPServer(): Promise<{ registered: boolean; warning?: string }> {
const manualCommand = getRufloMcpAddCommand(process.platform);
try {
const { execFileSync } = await import('child_process');
const { execSync } = await import('child_process');
// Check if codex CLI is available
let codex: ReturnType<typeof getCodexCliInvocation>;
try {
const output = process.platform === 'win32'
? execFileSync('where.exe', ['codex'], { encoding: 'utf-8', stdio: ['ignore', 'pipe', 'pipe'] })
: execFileSync('which', ['codex'], { encoding: 'utf-8', stdio: ['ignore', 'pipe', 'pipe'] });
codex = getCodexCliInvocation(output, process.platform);
execSync('which codex', { stdio: 'pipe' });
} catch {
return {
registered: false,
warning: `Codex CLI not found. Run: ${manualCommand}`,
warning: 'Codex CLI not found. Run: codex mcp add ruflo -- npx -y --package=@claude-flow/cli@latest claude-flow-mcp',
};
}
let existing: CodexMcpRegistration | undefined;
// Check if already registered. Prefer the structured `--json` output
// (each entry has a `name` field — confirmed current as of the 2026
// `codex mcp` CLI) over a plain substring match against the human
// -readable table, which false-positives on any server whose name or
// command merely contains "ruflo" and breaks silently if the table
// formatting changes.
try {
const listJson = execFileSync(codex.command, [...codex.prefixArgs, 'mcp', 'list', '--json'], {
encoding: 'utf-8',
stdio: ['ignore', 'pipe', 'pipe'],
});
const listJson = execSync('codex mcp list --json 2>&1', { encoding: 'utf-8' });
const parsed = JSON.parse(listJson);
// Confirmed shape (2026 `codex mcp` CLI) is a bare array; tolerate a
// future `{ servers: [...] }` wrapper but otherwise treat an
// unrecognized shape as "unknown" rather than silently concluding
// not-registered — falls through to the safe text-based fallback.
const servers = Array.isArray(parsed) ? parsed : Array.isArray(parsed?.servers) ? parsed.servers : null;
if (!servers) throw new Error('unrecognized `codex mcp list --json` shape');
existing = servers.find((server: unknown): server is CodexMcpRegistration =>
Boolean(server && typeof server === 'object' && (server as CodexMcpRegistration).name === 'ruflo'));
if (servers.some((s: unknown) => s && typeof s === 'object' && (s as { name?: unknown }).name === 'ruflo')) {
return { registered: true }; // Already registered
}
} catch {
// Treat a plain-text match as stale because its transport cannot be validated.
// --json unsupported (older codex CLI) or unparsable — fall back to
// the plain-text listing so registration still no-ops idempotently.
try {
const list = execFileSync(codex.command, [...codex.prefixArgs, 'mcp', 'list'], {
encoding: 'utf-8',
stdio: ['ignore', 'pipe', 'pipe'],
});
const list = execSync('codex mcp list 2>&1', { encoding: 'utf-8' });
if (list.includes('ruflo')) {
existing = { name: 'ruflo' };
return { registered: true };
}
} catch {
// Ignore list errors and attempt registration below.
// Ignore list errors — fall through to (re-)register below.
}
}
if (existing && hasExpectedRufloMcpTransport(existing, process.platform)) {
await this.ensureGlobalMcpStartupTimeout();
return {
registered: true,
...(!hasExpectedRufloMcpTimeout(existing)
? { warning: 'Updated Ruflo MCP startup timeout to 120 seconds' }
: {}),
};
}
// Register the MCP server.
//
// #2774: MUST target the dedicated stdio server binary
// (`claude-flow-mcp`, exported by `@claude-flow/cli`) — NOT the
// `ruflo mcp start` management CLI. The management CLI stays alive
// but never answers `initialize` on stdio, so Codex silently sees
// the server as configured but exposes zero Ruflo tools. The
// dedicated binary streams JSON-RPC over stdio directly, with all
// progress noise routed to stderr (also fixes the #2253 regression
// where an embedder progress line leaks onto stdout before the
// handshake).
try {
if (existing) {
execFileSync(codex.command, [...codex.prefixArgs, 'mcp', 'remove', 'ruflo'], {
stdio: ['ignore', 'pipe', 'pipe'],
execSync(
'codex mcp add ruflo -- npx -y --package=@claude-flow/cli@latest claude-flow-mcp',
{
stdio: 'pipe',
timeout: 10000,
});
}
const server = getRufloMcpServerConfig(process.platform);
execFileSync(codex.command, [...codex.prefixArgs, 'mcp', 'add', 'ruflo', '--', server.command, ...(server.args ?? [])], {
stdio: ['ignore', 'pipe', 'pipe'],
timeout: 10000,
});
await this.ensureGlobalMcpStartupTimeout();
}
);
return { registered: true };
} catch (err) {
const errorMessage = err instanceof Error ? err.message : String(err);
return {
registered: false,
warning: `Failed to register MCP server: ${errorMessage}. Run manually: ${manualCommand}`,
warning: `Failed to register MCP server: ${errorMessage}. Run manually: codex mcp add ruflo -- npx -y --package=@claude-flow/cli@latest claude-flow-mcp`,
};
}
} catch {
return {
registered: false,
warning: `Could not register MCP server. Run manually: ${manualCommand}`,
warning: 'Could not register MCP server. Run manually: codex mcp add ruflo -- npx -y --package=@claude-flow/cli@latest claude-flow-mcp',
};
}
}
private async ensureGlobalMcpStartupTimeout(): Promise<void> {
const codexHome = process.env.CODEX_HOME || path.join(os.homedir(), '.codex');
const configPath = path.join(codexHome, 'config.toml');
const config = await fs.readFile(configPath, 'utf-8');
const updated = upsertMcpServerStartupTimeout(config);
if (updated !== config) {
await fs.writeFile(configPath, updated, 'utf-8');
}
}
/**
* Generate AGENTS.md content
*/
@@ -670,8 +647,9 @@ ${this.skills.map(s => `- \`$${s}\` (Codex) / \`/${s}\` (Claude Code)`).join('\n
## MCP Integration
\`\`\`bash
# Start MCP server
npx ruflo mcp start
# Start Ruflo's MCP server over stdio (dedicated entry point — the
# management \`ruflo mcp start\` CLI does NOT answer JSON-RPC on stdio).
npx -y --package=@claude-flow/cli@latest claude-flow-mcp
\`\`\`
## Swarm Orchestration
v3/@claude-flow/codex/src/migrations/index.ts
+37 -56
View File
@@ -16,7 +16,6 @@ import type {
ApprovalPolicy,
SandboxMode,
} from '../types.js';
import { getRufloMcpServerConfig, renderMcpServerToml } from '../mcp-config.js';
/**
* Parsed CLAUDE.md structure
@@ -63,15 +62,6 @@ export interface CodeBlock {
line: number;
}
function isRufloMcpServer(name: string, args: string[] | undefined): boolean {
if (name === 'ruflo' || name === 'claude-flow' || name === 'claude_flow') {
return true;
}
const commandLine = (args ?? []).join(' ');
return /(?:^|\s)(?:ruflo|claude-flow)(?:@[^\s]+)?\s+mcp\s+start(?:\s|$)/.test(commandLine);
}
/**
* Parsed settings from CLAUDE.md content
*/
@@ -712,10 +702,7 @@ export function generateAgentsMdFromParsed(parsed: ParsedClaudeMd): string {
/**
* Convert settings.json to config.toml format
*/
export function convertSettingsToToml(
settings: Record<string, unknown>,
platform: NodeJS.Platform = process.platform,
): string {
export function convertSettingsToToml(settings: Record<string, unknown>): string {
const lines: string[] = [];
lines.push('# Migrated from settings.json');
lines.push('# Generated by @claude-flow/codex');
@@ -765,35 +752,34 @@ export function convertSettingsToToml(
lines.push('');
// MCP servers
let hasRuflo = false;
if (settings.mcpServers && typeof settings.mcpServers === 'object') {
for (const [name, config] of Object.entries(settings.mcpServers as Record<string, unknown>)) {
const mcpConfig = config as { command?: string; args?: string[]; env?: Record<string, string> };
if (isRufloMcpServer(name, mcpConfig.args)) {
if (!hasRuflo) {
lines.push(...renderMcpServerToml({
...getRufloMcpServerConfig(platform),
...(mcpConfig.env ? { env: mcpConfig.env } : {}),
}));
lines.push('');
hasRuflo = true;
}
continue;
lines.push(`[mcp_servers.${name}]`);
if (mcpConfig.command) {
lines.push(`command = "${mcpConfig.command}"`);
}
if (mcpConfig.args && mcpConfig.args.length > 0) {
const argsStr = mcpConfig.args.map((a) => `"${a}"`).join(', ');
lines.push(`args = [${argsStr}]`);
}
lines.push('enabled = true');
lines.push(...renderMcpServerToml({
name,
command: mcpConfig.command || 'npx',
enabled: true,
...(mcpConfig.args ? { args: mcpConfig.args } : {}),
...(mcpConfig.env ? { env: mcpConfig.env } : {}),
}));
if (mcpConfig.env && Object.keys(mcpConfig.env).length > 0) {
lines.push('');
lines.push(`[mcp_servers.${name}.env]`);
for (const [key, value] of Object.entries(mcpConfig.env)) {
lines.push(`${key} = "${value}"`);
}
}
lines.push('');
}
}
if (!hasRuflo) {
lines.push(...renderMcpServerToml(getRufloMcpServerConfig(platform)));
} else {
// Add default claude-flow server
lines.push('[mcp_servers.ruflo]');
lines.push('command = "npx"');
lines.push('args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]');
lines.push('enabled = true');
lines.push('');
}
@@ -821,10 +807,7 @@ export function convertSettingsToToml(
/**
* Generate config.toml from parsed CLAUDE.md
*/
export function generateConfigTomlFromParsed(
parsed: ParsedClaudeMd,
platform: NodeJS.Platform = process.platform,
): string {
export function generateConfigTomlFromParsed(parsed: ParsedClaudeMd): string {
const lines: string[] = [];
lines.push('# Migrated from CLAUDE.md');
lines.push('# Generated by @claude-flow/codex');
@@ -856,25 +839,23 @@ export function generateConfigTomlFromParsed(
lines.push('');
// MCP servers
let hasRuflo = false;
for (const server of parsed.mcpServers) {
if (isRufloMcpServer(server.name, server.args)) {
if (!hasRuflo) {
lines.push(...renderMcpServerToml(getRufloMcpServerConfig(platform)));
lines.push('');
hasRuflo = true;
if (parsed.mcpServers.length > 0) {
for (const server of parsed.mcpServers) {
lines.push(`[mcp_servers.${server.name.replace(/-/g, '_')}]`);
lines.push(`command = "${server.command}"`);
if (server.args && server.args.length > 0) {
const argsStr = server.args.map((a) => `"${a}"`).join(', ');
lines.push(`args = [${argsStr}]`);
}
} else {
lines.push(...renderMcpServerToml({
...server,
name: server.name.replace(/-/g, '_'),
}));
lines.push(`enabled = ${server.enabled ?? true}`);
lines.push('');
}
}
if (!hasRuflo) {
lines.push(...renderMcpServerToml(getRufloMcpServerConfig(platform)));
} else {
// Default claude-flow server
lines.push('[mcp_servers.ruflo]');
lines.push('command = "npx"');
lines.push('args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]');
lines.push('enabled = true');
lines.push('');
}
v3/@claude-flow/codex/tests/generators.test.ts
+1 -1
View File
@@ -650,7 +650,7 @@ describe('generateConfigToml', () => {
expect(result).toContain('[mcp_servers.ruflo]');
expect(result).toContain('command = "npx"');
expect(result).toContain('args = ["-y", "ruflo@latest", "mcp", "start"]');
expect(result).toContain(`args = ["-y", "--package=@claude-flow/cli@latest", "claude-flow-mcp"]`);
expect(result).toContain('enabled = true');
});