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Shanghua
5de8f4b198
- Add support for new database tools: GBIF, OBIS, WikiPathways, RNAcentral, ENCODE, GTEx, MGnify, GDC - Add optimizer tools and smolagents tool wrapper configs - Improve tool loading validation to filter out schema files and ensure tool names are strings - Update tool count from 713 to 734 tools - Fix tool validation to safely check supports_caching method using getattr - Add save_dir parameter to ToolDiscover tool - Update PyPIPackageInspector to inherit from BaseTool - Add smolagents as optional dependency in pyproject.toml - Simplify UniProt_search documentation - Minor log message improvements in smcp_server
619 B
619 B
GBIF Examples (Biodiversity → Databases)
About GBIF
- GBIF (Global Biodiversity Information Facility) is an open platform for global biodiversity data, providing species checklists, occurrence records, sampling events, and datasets used in ecology, biogeography, and conservation research.
Run:
python examples/databases/biodiversity/gbif/use_gbif.py
What it does:
- GBIF_search_species: calls
/species/searchwith a small page - GBIF_search_occurrences: calls
/occurrence/searchwith basic filters
Notes:
- Network required; respect GBIF rate limits.
- Adjust
limit/offsetfor pagination.